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School of Medicine Columbia

Image Analysis Software

Image and data analysis serve as crucial components in extracting meaningful insights from complex datasets and visual information. Employing advanced algorithms and computational tools, these analytical approaches enable researchers to interpret, quantify, and derive patterns from images and data, facilitating a deeper understanding of biological processes, materials, and phenomena.

Available Work Stations

Enhance spectral flow cytometry with spatial and morphological insights to interrogate and sort cell types that previously could not be identified or isolated.

Applications

  • exploration and analysis of flow cytometry data
  • perform cell-cyle analyses
  • export of data analysis into various file formats (.txt, .csv, .xls)
  • generation of publication-quality images
  • perform unbiased cell clustering analyses (tSNE), which is essential for the analysis of high-parameter flow cytometry data

Location

IRF B60

IRF Contact

Jason Kubinak

The ThermoFisher Scientific Amira Software is a powerful, comprehensive, and versatile software solution for visualizing, analyzing and understanding life science and biomedical research images from many image modalities, including Optical and Electron Microscopy, CT, MRI and other imaging modalities. With incredible speed and flexibility, Amira Software supports advanced 2D–5D bioimaging workflows in research areas ranging from structural and cellular biology to tissue imaging, neuroscience, anatomical imaging and bioengineering.

Location

IRF B60

IRF Contact

Lorain Junor

Equipment Website

With the software module Leica Application Suite X (LAS X) 3D Analysis you can measure various aspects of intracellular structures such as volumes of nuclei, their surface, or distances and angles between the nuclei. Individual 3D objects can be measured with the interactive 3D measurement tool. The analysis wizard guides you through the 3D analysis step by step to obtain automated measurement results, from image pre-processing, threshold adjustments, generation of a 3D binary mask, definition of measurement parameters up to the generation of reports.

Location

IRF B60

IRF Contact

Anna Harper




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